IL_9SUM_024

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CAGAAG*CGGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28265.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9SUM|1|A|C|701
9SUM|1|A|A|702
9SUM|1|A|G|703
9SUM|1|A|A|704
9SUM|1|A|A|705
9SUM|1|A|G|706
*
9SUM|1|A|C|711
9SUM|1|A|G|712
9SUM|1|A|G|713
9SUM|1|A|A|714
9SUM|1|A|C|715
9SUM|1|A|G|716

Current chains

Chain A

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L13

Chain c

60S ribosomal protein L28

Chain q

60S ribosomal protein L44