IL_9SUM_073

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9SUM|1|A|U|1873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9SUM|1|A|C|1860
9SUM|1|A|G|1861
9SUM|1|A|U|1862
9SUM|1|A|A|1863
9SUM|1|A|A|1864
9SUM|1|A|C|1865
*
9SUM|1|A|G|1870
9SUM|1|A|G|1871
9SUM|1|A|A|1872
9SUM|1|A|U|1873
9SUM|1|A|A|1874
9SUM|1|A|A|1875
9SUM|1|A|G|1876

Current chains

Chain A

25S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain T

Ribosomal protein L19

Chain r

60S ribosomal protein L43