IL_9SUM_165

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

9SUM|1|CA|A|539
9SUM|1|CA|G|540
9SUM|1|CA|G|541
9SUM|1|CA|G|542
9SUM|1|CA|C|543
9SUM|1|CA|A|544
9SUM|1|CA|A|545
9SUM|1|CA|G|546
*
9SUM|1|CA|C|576
9SUM|1|CA|U|577

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZB

40S ribosomal protein S9-A

Chain ZW

Small ribosomal subunit protein eS30

Chain u

Rps21 ribosomal protein