IL_9SUM_182

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

9SUM|1|CA|G|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43424.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

Number of instances in this motif group

2

Unit IDs

9SUM|1|CA|U|863
9SUM|1|CA|U|864
9SUM|1|CA|G|865
9SUM|1|CA|U|866
9SUM|1|CA|C|867
9SUM|1|CA|A|868
9SUM|1|CA|G|869
*
9SUM|1|CA|C|880
9SUM|1|CA|U|881
9SUM|1|CA|U|882
9SUM|1|CA|G|883
9SUM|1|CA|G|884
9SUM|1|CA|A|885
9SUM|1|CA|U|886
9SUM|1|CA|U|887
9SUM|1|CA|U|888
9SUM|1|CA|A|889

Current chains

Chain CA

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain ZF

Small ribosomal subunit protein uS11

Chain t

Small ribosomal subunit protein eS1