IL_9SUM_183

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31690.2

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|G|955
9SUM|1|CA|G|956
9SUM|1|CA|G|957
9SUM|1|CA|A|958
9SUM|1|CA|U|959
9SUM|1|CA|C|960
*
9SUM|1|CA|G|984
9SUM|1|CA|U|985
9SUM|1|CA|C|986

Current chains

Chain CA

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain D

60S ribosomal protein L2-A

Chain ZF

Small ribosomal subunit protein uS11

Chain ZS

40S ribosomal protein S26