IL_9SUM_185

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CGA*UUUUUGG

Length

10 nucleotides

Bulged bases

9SUM|1|CA|U|1066, 9SUM|1|CA|U|1068, 9SUM|1|CA|G|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82706.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

9SUM|1|CA|C|1004
9SUM|1|CA|G|1005
9SUM|1|CA|A|1006
*
9SUM|1|CA|U|1065
9SUM|1|CA|U|1066
9SUM|1|CA|U|1067
9SUM|1|CA|U|1068
9SUM|1|CA|U|1069
9SUM|1|CA|G|1070
9SUM|1|CA|G|1071

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZD

40S ribosomal protein S11-A

Chain ZE

40S ribosomal protein S13

Chain ZM

40S ribosomal protein S21

Chain ZO

40S ribosomal protein S22

Chain ZP

40S ribosomal protein S23

Chain ZT

40S ribosomal protein S27

Chain u

Rps21 ribosomal protein