IL_9SUM_210

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CUG*CGCUG

Length

8 nucleotides

Bulged bases

9SUM|1|CA|C|1347, 9SUM|1|CA|U|1348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9SUM|1|CA|C|1321
9SUM|1|CA|U|1322
9SUM|1|CA|G|1323
*
9SUM|1|CA|C|1345
9SUM|1|CA|G|1346
9SUM|1|CA|C|1347
9SUM|1|CA|U|1348
9SUM|1|CA|G|1349

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZH

Small ribosomal subunit protein uS9

Chain ZK

40S ribosomal protein S19-A

Chain ZL

Small ribosomal subunit protein uS10