IL_9SUM_212

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GCCAGCGA*UUGGGAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74283.2

Basepair signature

cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

Number of instances in this motif group

3

Unit IDs

9SUM|1|CA|G|1456
9SUM|1|CA|C|1457
9SUM|1|CA|C|1458
9SUM|1|CA|A|1459
9SUM|1|CA|G|1460
9SUM|1|CA|C|1461
9SUM|1|CA|G|1462
9SUM|1|CA|A|1463
*
9SUM|1|CA|U|1494
9SUM|1|CA|U|1495
9SUM|1|CA|G|1496
9SUM|1|CA|G|1497
9SUM|1|CA|G|1498
9SUM|1|CA|A|1499
9SUM|1|CA|A|1500
9SUM|1|CA|A|1501
9SUM|1|CA|C|1502

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZH

Small ribosomal subunit protein uS9

Chain ZK

40S ribosomal protein S19-A

Chain ZL

Small ribosomal subunit protein uS10

Chain ZV

Small ribosomal subunit protein uS14

Chain v

Small ribosomal subunit protein uS3

Chain x

40S ribosomal protein uS7 (formerly S5)