IL_9SUM_219

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26271.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

9SUM|1|CA|C|1619
9SUM|1|CA|G|1620
9SUM|1|CA|C|1621
9SUM|1|CA|U|1622
*
9SUM|1|CA|A|1728
9SUM|1|CA|A|1729
9SUM|1|CA|A|1730
9SUM|1|CA|A|1731
9SUM|1|CA|G|1732

Current chains

Chain CA

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain ZP

40S ribosomal protein S23

Chain ZW

Small ribosomal subunit protein eS30

Chain p

Small ribosomal subunit protein eS32