IL_9SYR_054

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_054 not in the Motif Atlas

Homologous match to IL_9PN5_031

Geometric discrepancy: 0.1083

The information below is about IL_9PN5_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9SYR|1|L1|G|1586
9SYR|1|L1|G|1587
9SYR|1|L1|U|1588
9SYR|1|L1|C|1589
*
9SYR|1|L1|G|1605
9SYR|1|L1|U|1606
9SYR|1|L1|C|1607

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein eL37