IL_9SYR_064

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

AC(PSU)*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_064 not in the Motif Atlas

Homologous match to IL_9H3G_052

Geometric discrepancy: 0.1669

The information below is about IL_9H3G_052

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9SYR|1|L1|A|1858
9SYR|1|L1|C|1859
9SYR|1|L1|PSU|1860
*
9SYR|1|L1|A|1874
9SYR|1|L1|C|1875
9SYR|1|L1|U|1876

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L2

5S ribosomal RNA; 5S rRNA

Chain LI

Large ribosomal subunit protein uL30

Chain Ls

60S ribosomal protein L29