IL_9SYR_078

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_078 not in the Motif Atlas

Homologous match to IL_9H3G_064

Geometric discrepancy: 0.0738

The information below is about IL_9H3G_064

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9SYR|1|L1|G|2358
9SYR|1|L1|U|2359
9SYR|1|L1|A|2360
9SYR|1|L1|G|2361
9SYR|1|L1|U|2362
9SYR|1|L1|A2M|2363
9SYR|1|L1|OMG|2364
*
9SYR|1|L1|C|3858
9SYR|1|L1|G|3859
9SYR|1|L1|A|3860
9SYR|1|L1|A|3861
9SYR|1|L1|A|3862
9SYR|1|L1|C|3863

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lc

60S ribosomal protein L4

Chain Lg

60S ribosomal protein L17