IL_9SYR_104

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_104 not in the Motif Atlas

Homologous match to IL_9PN5_085

Geometric discrepancy: 0.1684

The information below is about IL_9PN5_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.4

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9SYR|1|L1|PSU|3715
9SYR|1|L1|C|3716
9SYR|1|L1|A|3717
9SYR|1|L1|A2M|3718
9SYR|1|L1|A|3719
9SYR|1|L1|G|3720
9SYR|1|L1|U|3721
*
9SYR|1|L1|A|3732
9SYR|1|L1|A|3733
9SYR|1|L1|PSU|3734
9SYR|1|L1|G|3735
9SYR|1|L1|A|3736
9SYR|1|L1|A|3737
9SYR|1|L1|G|3738

Current chains

Chain L1

28S rRNA

Nearby chains

Chain La

60S ribosomal protein L8

Chain Lz

60S ribosomal protein L36