IL_9SYR_132

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9SYR|1|L1|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_132 not in the Motif Atlas

Homologous match to IL_8GLP_158

Geometric discrepancy: 0.0889

The information below is about IL_8GLP_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46211.1

Basepair signature

cWW-tWW-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9SYR|1|L1|C|4582
9SYR|1|L1|C|4583
9SYR|1|L1|A|4584
9SYR|1|L1|U|4585
*
9SYR|1|L1|A|4717
9SYR|1|L1|G|4718
9SYR|1|L1|G|4719
9SYR|1|L1|C|4720
9SYR|1|L1|G|4721

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lb

60S ribosomal protein L3

Chain Lf

Large ribosomal subunit protein uL13