IL_9SYR_170
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- UAU*ACG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SYR_170 not in the Motif Atlas
- Geometric match to IL_8GLP_197
- Geometric discrepancy: 0.1246
- The information below is about IL_8GLP_197
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
9SYR|1|S1|U|110
9SYR|1|S1|A|111
9SYR|1|S1|U|112
*
9SYR|1|S1|A|349
9SYR|1|S1|C|350
9SYR|1|S1|G|351
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein S8
- Chain SD
- 40S ribosomal protein S11
- Chain Sw
- Small ribosomal subunit protein eS4, X isoform
Coloring options: