IL_9SYR_172

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_172 not in the Motif Atlas

Homologous match to IL_9PN5_151

Geometric discrepancy: 0.1166

The information below is about IL_9PN5_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.4

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9SYR|1|S1|OMU|116
9SYR|1|S1|C|117
9SYR|1|S1|C|118
9SYR|1|S1|PSU|119
9SYR|1|S1|U|120
9SYR|1|S1|OMU|121
*
9SYR|1|S1|A|343
9SYR|1|S1|U|344
9SYR|1|S1|U|345
9SYR|1|S1|C|346
9SYR|1|S1|G|347

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S8

Chain Sw

Small ribosomal subunit protein eS4, X isoform