IL_9SYR_180

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9SYR|1|S1|U|361, 9SYR|1|S1|C|399, 9SYR|1|S1|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|U|359
9SYR|1|S1|A|360
9SYR|1|S1|U|361
9SYR|1|S1|C|362
9SYR|1|S1|A|363
9SYR|1|S1|A|364
*
9SYR|1|S1|U|396
9SYR|1|S1|G|397
9SYR|1|S1|A|398
9SYR|1|S1|C|399
9SYR|1|S1|C|400
9SYR|1|S1|A|401
9SYR|1|S1|C|402
9SYR|1|S1|G|403

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain SA

40S ribosomal protein S8

Chain SD

40S ribosomal protein S11

Chain Sg

Small ribosomal subunit protein uS12