IL_9SYR_188

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

9SYR|1|S1|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_188 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.2017

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_81485.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

32

Unit IDs

9SYR|1|S1|G|535
9SYR|1|S1|A|536
9SYR|1|S1|C|537
*
9SYR|1|S1|G|546
9SYR|1|S1|G|547
9SYR|1|S1|C|548
9SYR|1|S1|C|549

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Sn

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein