IL_9SYR_199

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_199 not in the Motif Atlas

Homologous match to IL_9PN5_177

Geometric discrepancy: 0.4662

The information below is about IL_9PN5_177

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9SYR|1|S1|G|694
9SYR|1|S1|C|695
9SYR|1|S1|G|696
*
9SYR|1|S1|C|734
9SYR|1|S1|C|735
9SYR|1|S1|C|736

Current chains

Chain S1

18S rRNA

Nearby chains

Chain Sf

40S ribosomal protein S15a

Chain Sz

40S ribosomal protein S7