IL_9SYR_203

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

AC*GAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_203 not in the Motif Atlas

Homologous match to IL_9PN5_178

Geometric discrepancy: 0.1388

The information below is about IL_9PN5_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.5

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

26

Unit IDs

9SYR|1|S1|A|802
9SYR|1|S1|C|803
*
9SYR|1|S1|G|860
9SYR|1|S1|A|861
9SYR|1|S1|A|862
9SYR|1|S1|PSU|863

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S11

Chain Sf

40S ribosomal protein S15a

Chain Sg

Small ribosomal subunit protein uS12

Chain Sz

40S ribosomal protein S7