IL_9SYR_209

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9SYR|1|S1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_209 not in the Motif Atlas

Homologous match to IL_9PN5_183

Geometric discrepancy: 0.093

The information below is about IL_9PN5_183

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9SYR|1|S1|G|925
9SYR|1|S1|A|926
9SYR|1|S1|C|927
*
9SYR|1|S1|G|1014
9SYR|1|S1|U|1015
9SYR|1|S1|U|1016
9SYR|1|S1|U|1017

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S13

Chain Sk

40S ribosomal protein S27