IL_9SYR_225

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_225 not in the Motif Atlas

Homologous match to IL_9H3G_214

Geometric discrepancy: 0.1612

The information below is about IL_9H3G_214

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9SYR|1|S1|G|1235
9SYR|1|S1|G|1236
*
9SYR|1|S1|C|1521
9SYR|1|S1|A|1522
9SYR|1|S1|C|1523

Current chains

Chain S1

18S rRNA

Nearby chains

Chain S3

Transfer RNA; tRNA

Chain Sa

40S ribosomal protein S15

Chain Sd

Small ribosomal subunit protein uS13

Chain Sm

40S ribosomal protein S25