IL_9SYR_232
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9SYR|1|S1|C|1331, 9SYR|1|S1|U|1494, 9SYR|1|S1|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SYR_232 not in the Motif Atlas
- Homologous match to IL_9H3G_220
- Geometric discrepancy: 0.0896
- The information below is about IL_9H3G_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.2
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9SYR|1|S1|U|1329
9SYR|1|S1|G|1330
9SYR|1|S1|C|1331
9SYR|1|S1|A|1332
9SYR|1|S1|U|1333
9SYR|1|S1|G|1334
9SYR|1|S1|G|1335
*
9SYR|1|S1|U|1492
9SYR|1|S1|C|1493
9SYR|1|S1|U|1494
9SYR|1|S1|G|1495
9SYR|1|S1|U|1496
9SYR|1|S1|G|1497
9SYR|1|S1|A|1498
9SYR|1|S1|U|1499
9SYR|1|S1|G|1500
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S10
- Chain Sl
- 40S ribosomal protein S20
- Chain Sp
- 40S ribosomal protein S29
- Chain Sr
- Ubiquitin
- Chain Sx
- 40S ribosomal protein S3
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