IL_9SYR_232

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

9SYR|1|S1|C|1331, 9SYR|1|S1|U|1494, 9SYR|1|S1|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|U|1329
9SYR|1|S1|G|1330
9SYR|1|S1|C|1331
9SYR|1|S1|A|1332
9SYR|1|S1|U|1333
9SYR|1|S1|G|1334
9SYR|1|S1|G|1335
*
9SYR|1|S1|U|1492
9SYR|1|S1|C|1493
9SYR|1|S1|U|1494
9SYR|1|S1|G|1495
9SYR|1|S1|U|1496
9SYR|1|S1|G|1497
9SYR|1|S1|A|1498
9SYR|1|S1|U|1499
9SYR|1|S1|G|1500

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S10

Chain Sl

40S ribosomal protein S20

Chain Sp

40S ribosomal protein S29

Chain Sr

Ubiquitin

Chain Sx

40S ribosomal protein S3