IL_9SYR_247

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9SYR|1|S1|C|1701, 9SYR|1|S1|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_247 not in the Motif Atlas

Homologous match to IL_9PN5_220

Geometric discrepancy: 0.1182

The information below is about IL_9PN5_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

7

Unit IDs

9SYR|1|S1|C|1700
9SYR|1|S1|C|1701
9SYR|1|S1|G|1702
*
9SYR|1|S1|C|1833
9SYR|1|S1|A|1834
9SYR|1|S1|A|1835
9SYR|1|S1|G|1836

Current chains

Chain S1

18S rRNA

Nearby chains

Chain S2

mRNA

Chain S3

Transfer RNA; tRNA

Chain Sj

40S ribosomal protein S26