IL_9SYR_256

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SYR_256 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.0953

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9SYR|1|S1|C|1739
9SYR|1|S1|C|1740
9SYR|1|S1|U|1741
*
9SYR|1|S1|A|1793
9SYR|1|S1|C|1794
9SYR|1|S1|G|1795

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L24

Chain SA

40S ribosomal protein S8

Chain Sy

40S ribosomal protein S6