IL_9T0Y_169
3D structure
- PDB id
- 9T0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome from delta-9 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.87 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 9T0Y|1|a|U|2689, 9T0Y|1|a|U|2690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9T0Y_169 not in the Motif Atlas
- Homologous match to IL_7A0S_096
- Geometric discrepancy: 0.1792
- The information below is about IL_7A0S_096
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_82016.1
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9T0Y|1|a|U|2687
9T0Y|1|a|G|2688
9T0Y|1|a|U|2689
9T0Y|1|a|U|2690
9T0Y|1|a|C|2691
*
9T0Y|1|a|G|2718
9T0Y|1|a|G|2719
9T0Y|1|a|U|2720
9T0Y|1|a|A|2721
9T0Y|1|a|G|2722
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain j
- Large ribosomal subunit protein uL14
- Chain m
- Large ribosomal subunit protein bL17
- Chain o
- Large ribosomal subunit protein bL19
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