IL_9T0Z_014

3D structure

PDB id

9T0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

HPFcold Bound Hibernating C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9T0Z|1|A|U|241, 9T0Z|1|A|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T0Z_014 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.1693

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9T0Z|1|A|G|239
9T0Z|1|A|A|240
9T0Z|1|A|U|241
9T0Z|1|A|U|242
9T0Z|1|A|A|243
9T0Z|1|A|G|244
*
9T0Z|1|A|C|274
9T0Z|1|A|G|275
9T0Z|1|A|A|276
9T0Z|1|A|C|277
9T0Z|1|A|G|278
9T0Z|1|A|A|279
9T0Z|1|A|U|280
9T0Z|1|A|C|281

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17