IL_9T0Z_020

3D structure

PDB id

9T0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

HPFcold Bound Hibernating C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T0Z_020 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.0975

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9T0Z|1|A|U|406
9T0Z|1|A|G|407
9T0Z|1|A|A|408
9T0Z|1|A|A|409
9T0Z|1|A|G|410
9T0Z|1|A|A|411
9T0Z|1|A|A|412
9T0Z|1|A|G|413
*
9T0Z|1|A|U|424
9T0Z|1|A|G|425
9T0Z|1|A|U|426
9T0Z|1|A|A|427
9T0Z|1|A|A|428
9T0Z|1|A|A|429
9T0Z|1|A|G|430

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4