IL_9T0Z_022
3D structure
- PDB id
- 9T0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- HPFcold Bound Hibernating C. burnetii 30S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GGAAG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- 9T0Z|1|A|U|482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9T0Z_022 not in the Motif Atlas
- Homologous match to IL_6CZR_130
- Geometric discrepancy: 0.5223
- The information below is about IL_6CZR_130
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.3
- Basepair signature
- cWW-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9T0Z|1|A|G|443
9T0Z|1|A|G|444
9T0Z|1|A|A|445
9T0Z|1|A|A|446
9T0Z|1|A|G|447
*
9T0Z|1|A|C|480
9T0Z|1|A|G|481
9T0Z|1|A|U|482
9T0Z|1|A|U|483
9T0Z|1|A|A|484
9T0Z|1|A|C|485
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain P
- Small ribosomal subunit protein bS16
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