IL_9T0Z_026
3D structure
- PDB id
- 9T0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- HPFcold Bound Hibernating C. burnetii 30S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9T0Z|1|A|A|529, 9T0Z|1|A|U|531, 9T0Z|1|A|A|532
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9T0Z_026 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.2543
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9T0Z|1|A|G|512
9T0Z|1|A|U|513
9T0Z|1|A|G|514
9T0Z|1|A|C|515
9T0Z|1|A|C|516
9T0Z|1|A|A|517
9T0Z|1|A|G|518
*
9T0Z|1|A|C|525
9T0Z|1|A|G|526
9T0Z|1|A|G|527
9T0Z|1|A|U|528
9T0Z|1|A|A|529
9T0Z|1|A|A|530
9T0Z|1|A|U|531
9T0Z|1|A|A|532
9T0Z|1|A|C|533
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 9
- Ribosome hibernation promoting factor
- Chain C
- Small ribosomal subunit protein uS3
- Chain D
- Small ribosomal subunit protein uS4
- Chain L
- Small ribosomal subunit protein uS12
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