IL_9T0Z_043

3D structure

PDB id

9T0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

HPFcold Bound Hibernating C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GCA*UUCUC

Length

8 nucleotides

Bulged bases

9T0Z|1|A|C|930

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T0Z_043 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.2761

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

9T0Z|1|A|G|929
9T0Z|1|A|C|930
9T0Z|1|A|A|931
*
9T0Z|1|A|U|1377
9T0Z|1|A|U|1378
9T0Z|1|A|C|1379
9T0Z|1|A|U|1380
9T0Z|1|A|C|1381

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 9

Ribosome hibernation promoting factor

Chain G

Small ribosomal subunit protein uS7