IL_9T4R_018

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAAG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_018 not in the Motif Atlas

Homologous match to IL_6CZR_130

Geometric discrepancy: 0.1876

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9T4R|1|A|G|454
9T4R|1|A|G|455
9T4R|1|A|A|456
9T4R|1|A|A|457
9T4R|1|A|G|458
*
9T4R|1|A|C|491
9T4R|1|A|G|492
9T4R|1|A|G|493
9T4R|1|A|U|494
9T4R|1|A|A|495
9T4R|1|A|C|496

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16