IL_9T4R_022

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9T4R|1|A|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_022 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1133

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9T4R|1|A|C|577
9T4R|1|A|G|578
9T4R|1|A|U|579
9T4R|1|A|A|580
9T4R|1|A|A|581
9T4R|1|A|A|582
9T4R|1|A|G|583
*
9T4R|1|A|C|889
9T4R|1|A|G|890

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17