IL_9T4R_044

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9T4R|1|A|C|1210, 9T4R|1|A|A|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_044 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.188

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9T4R|1|A|G|1068
9T4R|1|A|G|1069
*
9T4R|1|A|U|1209
9T4R|1|A|C|1210
9T4R|1|A|A|1211
9T4R|1|A|U|1212
9T4R|1|A|C|1213

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain N

Small ribosomal subunit protein uS14B

Chain j

Small ribosomal subunit protein uS10