IL_9T4R_047

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

9T4R|1|A|U|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_047 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2011

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

9T4R|1|A|G|1135
9T4R|1|A|U|1136
9T4R|1|A|U|1137
9T4R|1|A|G|1138
*
9T4R|1|A|C|1155
9T4R|1|A|A|1156
9T4R|1|A|C|1157
9T4R|1|A|U|1158
9T4R|1|A|C|1159

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain j

Small ribosomal subunit protein uS10