IL_9T4R_055

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_055 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.1423

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9T4R|1|A|G|1411
9T4R|1|A|C|1412
9T4R|1|A|C|1413
9T4R|1|A|C|1414
*
9T4R|1|A|G|1508
9T4R|1|A|U|1509
9T4R|1|A|A|1510
9T4R|1|A|A|1511
9T4R|1|A|C|1512

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

aur mRNA

Chain Z

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA