IL_9T4R_070

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

9T4R|1|a|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_070 not in the Motif Atlas

Geometric match to IL_6UFG_001

Geometric discrepancy: 0.0973

The information below is about IL_6UFG_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

9T4R|1|a|G|81
9T4R|1|a|G|82
9T4R|1|a|G|83
9T4R|1|a|A|84
9T4R|1|a|G|85
*
9T4R|1|a|C|97
9T4R|1|a|U|98
9T4R|1|a|U|99
9T4R|1|a|U|100
9T4R|1|a|G|101
9T4R|1|a|A|102
9T4R|1|a|U|103
9T4R|1|a|C|104

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24

Chain x

Large ribosomal subunit protein uL29