IL_9T4R_081

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_081 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.0873

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9T4R|1|a|A|581
9T4R|1|a|G|582
9T4R|1|a|A|583
9T4R|1|a|G|584
*
9T4R|1|a|U|597
9T4R|1|a|G|598
9T4R|1|a|A|599
9T4R|1|a|U|600

Current chains

Chain a

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain p

Large ribosomal subunit protein bL20