IL_9T4R_086

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9T4R|1|a|G|846, 9T4R|1|a|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_086 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1084

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

9T4R|1|a|G|719
9T4R|1|a|A|720
9T4R|1|a|A|721
9T4R|1|a|A|722
9T4R|1|a|C|723
*
9T4R|1|a|G|844
9T4R|1|a|A|845
9T4R|1|a|G|846
9T4R|1|a|A|847
9T4R|1|a|U|848
9T4R|1|a|A|849
9T4R|1|a|G|850
9T4R|1|a|C|851

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15