IL_9T4R_106

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9T4R|1|a|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_106 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.3078

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9T4R|1|a|U|1062
9T4R|1|a|U|1063
9T4R|1|a|A|1064
9T4R|1|a|A|1065
9T4R|1|a|G|1066
9T4R|1|a|U|1067
9T4R|1|a|G|1068
*
9T4R|1|a|C|1184
9T4R|1|a|U|1185
9T4R|1|a|A|1186
9T4R|1|a|A|1187
9T4R|1|a|A|1188

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain J

Large ribosomal subunit protein uL13

Chain g

Large ribosomal subunit protein uL6