IL_9T4R_110

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCCAGACAA*UCGAG

Length

14 nucleotides

Bulged bases

9T4R|1|a|A|1090

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_110 not in the Motif Atlas

Geometric match to IL_8GLP_082

Geometric discrepancy: 0.2602

The information below is about IL_8GLP_082

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9T4R|1|a|C|1087
9T4R|1|a|C|1088
9T4R|1|a|C|1089
9T4R|1|a|A|1090
9T4R|1|a|G|1091
9T4R|1|a|A|1092
9T4R|1|a|C|1093
9T4R|1|a|A|1094
9T4R|1|a|A|1095
*
9T4R|1|a|U|1152
9T4R|1|a|C|1153
9T4R|1|a|G|1154
9T4R|1|a|A|1155
9T4R|1|a|G|1156

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain g

Large ribosomal subunit protein uL6