IL_9T4R_115

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9T4R|1|a|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_115 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.161

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9T4R|1|a|C|1246
9T4R|1|a|G|1247
9T4R|1|a|U|1248
9T4R|1|a|U|1249
9T4R|1|a|G|1250
9T4R|1|a|A|1251
9T4R|1|a|A|1252
9T4R|1|a|G|1253
*
9T4R|1|a|U|1272
9T4R|1|a|G|1273
9T4R|1|a|G|1274
9T4R|1|a|A|1275
9T4R|1|a|G|1276

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20