IL_9T4R_121

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_121 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2083

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9T4R|1|a|U|1394
9T4R|1|a|G|1395
9T4R|1|a|A|1396
9T4R|1|a|G|1397
9T4R|1|a|G|1398
*
9T4R|1|a|C|1407
9T4R|1|a|G|1408
9T4R|1|a|U|1409
9T4R|1|a|A|1410
9T4R|1|a|G|1411

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2

Chain w

Large ribosomal subunit protein bL28