IL_9T4R_122

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UAAU*AAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_122 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.1312

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

9T4R|1|a|U|1448
9T4R|1|a|A|1449
9T4R|1|a|A|1450
9T4R|1|a|U|1451
*
9T4R|1|a|A|1630
9T4R|1|a|A|1631
9T4R|1|a|A|1632
9T4R|1|a|A|1633

Current chains

Chain a

23S rRNA

Nearby chains