IL_9T4R_124

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

9T4R|1|a|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_124 not in the Motif Atlas

Geometric match to IL_9E6Q_057

Geometric discrepancy: 0.194

The information below is about IL_9E6Q_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9T4R|1|a|C|1461
9T4R|1|a|G|1462
9T4R|1|a|A|1463
9T4R|1|a|U|1464
9T4R|1|a|G|1465
*
9T4R|1|a|C|1622
9T4R|1|a|U|1623
9T4R|1|a|A|1624
9T4R|1|a|G|1625

Current chains

Chain a

23S rRNA

Nearby chains