IL_9T4R_139
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UGCUAAA*UGAUGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9T4R|1|a|U|1826, 9T4R|1|a|U|1841, 9T4R|1|a|U|1845
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9T4R_139 not in the Motif Atlas
- Homologous match to IL_7A0S_065
- Geometric discrepancy: 0.1207
- The information below is about IL_7A0S_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9T4R|1|a|U|1823
9T4R|1|a|G|1824
9T4R|1|a|C|1825
9T4R|1|a|U|1826
9T4R|1|a|A|1827
9T4R|1|a|A|1828
9T4R|1|a|A|1829
*
9T4R|1|a|U|1838
9T4R|1|a|G|1839
9T4R|1|a|A|1840
9T4R|1|a|U|1841
9T4R|1|a|G|1842
9T4R|1|a|U|1843
9T4R|1|a|A|1844
9T4R|1|a|U|1845
9T4R|1|a|A|1846
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: