IL_9T4R_144

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_144 not in the Motif Atlas

Homologous match to IL_7A0S_070

Geometric discrepancy: 0.2169

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9T4R|1|a|A|1881
9T4R|1|a|G|1882
9T4R|1|a|G|1883
9T4R|1|a|A|1884
9T4R|1|a|G|1885
*
9T4R|1|a|C|1907
9T4R|1|a|G|1908
9T4R|1|a|A|1909
9T4R|1|a|A|1910
9T4R|1|a|U|1911

Current chains

Chain a

23S rRNA

Nearby chains