IL_9T4R_171
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 9T4R|1|a|G|2805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9T4R_171 not in the Motif Atlas
- Homologous match to IL_7A0S_093
- Geometric discrepancy: 0.0775
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9T4R|1|a|U|2661
9T4R|1|a|U|2662
9T4R|1|a|G|2663
9T4R|1|a|A|2664
9T4R|1|a|G|2665
*
9T4R|1|a|C|2799
9T4R|1|a|A|2800
9T4R|1|a|A|2801
9T4R|1|a|G|2802
9T4R|1|a|A|2803
9T4R|1|a|U|2804
9T4R|1|a|G|2805
9T4R|1|a|A|2806
9T4R|1|a|G|2807
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain J
- Large ribosomal subunit protein uL13
- Chain d
- Large ribosomal subunit protein uL3
Coloring options: