IL_9T4R_176

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

9T4R|1|a|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T4R_176 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.0814

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9T4R|1|a|G|2762
9T4R|1|a|A|2763
9T4R|1|a|U|2764
9T4R|1|a|A|2765
9T4R|1|a|A|2766
9T4R|1|a|G|2767
*
9T4R|1|a|U|2787
9T4R|1|a|G|2788
9T4R|1|a|A|2789
9T4R|1|a|A|2790
9T4R|1|a|G|2791
9T4R|1|a|C|2792

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain J

Large ribosomal subunit protein uL13

Chain g

Large ribosomal subunit protein uL6