IL_9T61_057

3D structure

PDB id

9T61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Doxycycline Bound C. burnetii 30S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GUUG*CUAAUC

Length

10 nucleotides

Bulged bases

9T61|1|A|U|1254, 9T61|1|A|A|1277, 9T61|1|A|U|1278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9T61_057 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.4945

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

9T61|1|A|G|1252
9T61|1|A|U|1253
9T61|1|A|U|1254
9T61|1|A|G|1255
*
9T61|1|A|C|1274
9T61|1|A|U|1275
9T61|1|A|A|1276
9T61|1|A|A|1277
9T61|1|A|U|1278
9T61|1|A|C|1279

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14